diff --git a/configure.in b/configure.in
index e52b41bcc..54f511fb9 100644
--- a/configure.in
+++ b/configure.in
@@ -350,8 +350,6 @@ AC_OUTPUT( \
 	Tools/Prep/GenAirports/Makefile \
 	Tools/Prep/ShapeFile/Makefile \
 	Tools/Utils/Makefile \
-	Tools/Utils/Makedir/Makefile \
-	Tools/Areas/Makefile \
 	Tests/Makefile \
 )